S4 class for mrgsolve model object

Slots

model: model name <character>
modfile: source model specification file name <character>
package: the shared object file name character>
project: working directory; must be writeable with no spaces <character>
start: simulation start time <numeric>
end: simulation end time <numeric>
delta: simulation time interval <numeric>
add: additional simulation times <numeric-vector>
param: <parameter_list>
fixed: a <parameter_list> of fixed value parameters; these are not updatable from R
init: <cmt_list>
digits: significant digits in simulated output; negative integer means ignore <numeric>
hmin: passed to dlsoda <numeric>
hmax: passed to dlsoda <numeric>
mxhnil: passed to dlsoda <numeric>
ixpr: passed to dlsoda <numeric>
itol: passed to dlsoda <int>; itol=1 indicates scalar values for atol and rtol; itol=4 indicates customized tolerances for each compartment
atol: passed to dlsoda <numeric>
rtol: passed to dlsoda <numeric>
vec_rtol: a vector of rtol to be used when itol=4 <numeric>
vec_atol: a vector of atol to be used when itol=4 <numeric>
ss_rtol: relative tolerance to use when finding PK steady state <numeric>
ss_atol: absolute tolerance to use when finding PK steady state <numeric>
maxsteps: passed to dlsoda <numeric>
preclean: passed to R CMD SHLIB during compilation <logical>
verbose: print run information to screen <logical>
quiet: print various information to screen <logical>
debug: not used
tscale: used to scale time in simulated output <numeric>
omega: matlist for simulating individual-level random effects
sigma: matlist for simulating residual error variates
args: <list> of arguments to be passed to mrgsim
advan: either 2, 4, or 13 <numeric>
trans: either 1, 2, 4, or 11 <numeric>
request: vector of compartments to request <character>
soloc: directory path for storing the model shared object <character>
code: a character vector of the model code
capture: a character vector of variables that are captured from the simulation <character>
mindt: minimum time between simulation records <numeric>
envir: internal model environment <environment>
shlib: a list of data related to build outcome <list>
funs: symbol names for model functions in the shared object
annot: model annotations <list>
plugin: model plugins <character>
Icap: capture indices to recover in the simulation <integer>
capL: labels for Icap; <character>
Icmt: compartment indices to recover in the simulation <integer>
cmtL: labels for Icmt; <character>
ss_cmt: compartments numbers to be considered when advancing the system to steady state <integer>

Notes

Spaces in paths (project and soloc) are prohibited.

S4 class for mrgsolve model object

Slots

Notes

See also