Import model estimates from a NONMEM ext file

Import model estimates from a NONMEM ext file

Usage

nmext(
  run = NA_real_,
  project = getwd(),
  file = paste0(run, ".ext"),
  path = NULL,
  root = c("working", "cppfile"),
  index = "last",
  theta = TRUE,
  omega = TRUE,
  sigma = TRUE,
  olabels = NULL,
  slabels = NULL,
  oprefix = "",
  sprefix = "",
  tname = "THETA",
  oname = "...",
  sname = "...",
  read_fun = "data.table",
  env = NULL
)

Arguments

run

run number.

project

project directory.

file

deprecated; use path instead.

path

full path to NONMEM ext file.

root

the directory that path and project are relative to; this is currently limited to the working directory or cppdir, the directory where the model file is located.

index

the estimation number to return; "last" will return the last estimation results; otherwise, pass an integer indicating which estimation results to return.

theta

logical; if TRUE, the $THETA vector is returned.

omega

logical; if TRUE, the $OMEGA matrix is returned.

sigma

logical; if TRUE, the $SIGMA matrix is returned.

olabels

labels for $OMEGA.

slabels

labels for $SIGMA.

oprefix

prefix for $OMEGA labels.

sprefix

prefix for $SIGMA labels.

tname

name for $THETA.

oname

name for $OMEGA.

sname

name for $SIGMA.

read_fun

function to use when reading the ext file.

env

internal use only.

See also

nmxml(), read_nmext()