Import model estimates from a NONMEM ext file
Usage
nmext(
run = NA_real_,
project = getwd(),
file = paste0(run, ".ext"),
path = NULL,
root = c("working", "cppfile"),
index = "last",
theta = TRUE,
omega = TRUE,
sigma = TRUE,
olabels = NULL,
slabels = NULL,
oprefix = "",
sprefix = "",
tname = "THETA",
oname = "...",
sname = "...",
read_fun = "data.table",
env = NULL
)
Arguments
- run
run number
- project
project directory
- file
deprecated; use
path
instead- path
full path to NONMEM
ext
file- root
the directory that `path` and `project` are relative to; this is currently limited to the `working` directory or `cppdir`, the directory where the model file is located
- index
the estimation number to return; "last" will return the last estimation results; otherwise, pass an integer indicating which estimation results to return
- theta
logical; if TRUE, the
$THETA
vector is returned- omega
logical; if TRUE, the
$OMEGA
matrix is returned- sigma
logical; if TRUE, the
$SIGMA
matrix is returned- olabels
labels for
$OMEGA
- slabels
labels for
$SIGMA
- oprefix
prefix for
$OMEGA
labels- sprefix
prefix for
$SIGMA
labels- tname
name for
$THETA
- oname
name for
$OMEGA
- sname
name for
$SIGMA
- read_fun
function to use when reading the
ext
file- env
internal