odeproblem.cpp File Reference

#include <cmath>
#include <vector>
#include "RcppInclude.h"
#include "odeproblem.h"
#include "mrgsolve.h"

Functions
void	dosimeta (void *prob_)
void	dosimeps (void *prob_)
void	main_derivs (double t, double *y, double *ydot, odeproblem *data)
double	PolyExp (const double &x, const double &dose, const double &rate, const double &xinf, const double &tau, const bool ss, const dvec &a, const dvec &alpha, const int n)
Rcpp::List	TOUCH_FUNS (const Rcpp::NumericVector &lparam, const Rcpp::NumericVector &linit, int Neta, int Neps, const Rcpp::CharacterVector &capture, const Rcpp::List &funs, Rcpp::Environment envir)

Function Documentation

dosimeps()

void dosimeps

(

void *

prob_

)

dosimeta()

void dosimeta

(

void *

prob_

)

main_derivs()

void main_derivs	(	double	t,
		double *	y,
		double *	ydot,
		odeproblem *	data
	)

Derivative function that gets called by the solver.

Parameters

neq	number of equations
t	solver time
y	current state
ydot	left hand side of differential equations
prob	an odeproblem object

PolyExp()

double PolyExp	(	const double &	x,
		const double &	dose,
		const double &	rate,
		const double &	xinf,
		const double &	tau,
		const bool	ss,
		const dvec &	a,
		const dvec &	alpha,
		const int	n
	)

Calculate PK model polyexponentials.

TOUCH_FUNS()

Rcpp::List TOUCH_FUNS	(	const Rcpp::NumericVector &	lparam,
		const Rcpp::NumericVector &	linit,
		int	Neta,
		int	Neps,
		const Rcpp::CharacterVector &	capture,
		const Rcpp::List &	funs,
		Rcpp::Environment	envir
	)

Call the $MAIN function from a model object.

Parameters

lparam	model parameter value
linit	model initial contition values
Neta	number of rows in OMEGA
Neps	number of rows in SIGMA
capture	vector of capture names
funs	a list of model function pointers

Returns

list with updated initial conditions, number of paramerters, and number of equations