devtran.cpp File Reference

#include <string>
#include "mrgsolve.h"
#include "odeproblem.h"
#include "dataobject.h"
#include "RcppInclude.h"
#include "LSODA.h"

Macros
#define	CRUMP(a)   throw Rcpp::exception(a,false)
#define	REP(a)   Rcpp::Rcout << #a << std::endl;
#define	nREP(a)   Rcpp::Rcout << a << std::endl;
#define	say(a)   Rcpp::Rcout << a << std::endl;
#define	__ALAG_POS   -1200

Functions
Rcpp::List	DEVTRAN (const Rcpp::List parin, const Rcpp::NumericVector &inpar, const Rcpp::CharacterVector &parnames, const Rcpp::NumericVector &init, Rcpp::CharacterVector &cmtnames, const Rcpp::IntegerVector &capture, const Rcpp::List &funs, const Rcpp::NumericMatrix &data, const Rcpp::NumericMatrix &idata, Rcpp::NumericMatrix &OMEGA, Rcpp::NumericMatrix &SIGMA, Rcpp::Environment envir)

Macro Definition Documentation

__ALAG_POS

#define __ALAG_POS   -1200

CRUMP

#define CRUMP

(

a

)

throw Rcpp::exception(a,false)

nREP

#define nREP

(

a

)

Rcpp::Rcout << a << std::endl;

REP

#define REP

(

a

)

Rcpp::Rcout << #a << std::endl;

say

#define say

(

a

)

Rcpp::Rcout << a << std::endl;

Function Documentation

DEVTRAN()

Rcpp::List DEVTRAN	(	const Rcpp::List	parin,
		const Rcpp::NumericVector &	inpar,
		const Rcpp::CharacterVector &	parnames,
		const Rcpp::NumericVector &	init,
		Rcpp::CharacterVector &	cmtnames,
		const Rcpp::IntegerVector &	capture,
		const Rcpp::List &	funs,
		const Rcpp::NumericMatrix &	data,
		const Rcpp::NumericMatrix &	idata,
		Rcpp::NumericMatrix &	OMEGA,
		Rcpp::NumericMatrix &	SIGMA,
		Rcpp::Environment	envir
	)

Perform a simulation run.

Parameters

parin	list of data and options for the simulation
inpar	parameter values
parnames	parameter names
init	numeric initial values
cmtnames	compartment names
capture	indices in capture vector to actually get
funs	list of pointer addresses to model functions generated by getNativeSymbolInfo()
data	the main data set
idata	the idata data aset
OMEGA	between-ID normal random effects
SIGMA	within-ID normal random effects
envir	the model environment

Returns

list containing matrix of simulated data and a character vector of tran names that may have been carried into the output