#include <dataobject.h>

Public Member Functions
	dataobject (Rcpp::NumericMatrix _data, Rcpp::CharacterVector _parnames)
	constructor More...

	dataobject (Rcpp::NumericMatrix _data, Rcpp::CharacterVector _parnames, Rcpp::CharacterVector _initnames)
	constructor More...

	~dataobject ()

unsigned int	nrow () const

unsigned int	ncol () const

unsigned int	nid () const

unsigned int	idcol () const

int	start (int i) const

int	end (int i) const

void	map_uid ()

double	get_uid (int i) const

uidtype	return_uid ()

void	copy_parameters (int this_row, odeproblem *prob)

void	copy_next_parameters (int id_n, bool from_data, int this_row, odeproblem *prob)

void	next_id (int id_n)

void	copy_inits (int this_row, odeproblem *prob)

void	reload_parameters (const Rcpp::NumericVector &param, odeproblem *prob)

void	idata_row ()

unsigned int	get_idata_row (const double ID)

void	locate_tran ()

void	get_records (recstack &a, int NID, int neq, unsigned int &obscount, unsigned int &evcount, bool obsonly, bool debug)

void	get_records_pred (recstack &a, int NID, int neq, unsigned int &obscount, unsigned int &evcount, bool obsonly, bool debug)

void	check_idcol (dataobject &data)

double	get_value (const int row, const int col) const

double	get_id_value (const int row) const

Rcpp::IntegerVector	get_col_n (const Rcpp::CharacterVector &what)

void	carry_out (const recstack &a, Rcpp::NumericMatrix &ans, dataobject &idat, const Rcpp::IntegerVector &data_carry, const unsigned int data_carry_start, const Rcpp::IntegerVector &idata_carry, const unsigned int idata_carry_start)

Public Attributes
Rcpp::NumericMatrix	Data

std::vector< unsigned int >	col

Rcpp::CharacterVector	Data_names

std::deque< double >	Uid
	unique IDs in the data set More...

std::deque< int >	Startrow
	start row for each ID More...

std::deque< int >	Endrow
	data set end row for each ID More...

int	Idcol
	which column holds ID More...

std::map< double, int >	idmap
	map to get More...

std::vector< int >	par_from
	index for parameters in data set More...

std::vector< int >	par_to
	index for parameters in param list More...

Rcpp::CharacterVector	parnames
	names of model parameters More...

std::vector< int >	cmt_from
	index for compartments in data set More...

std::vector< int >	cmt_to
	index for compartments in init list More...

Rcpp::CharacterVector	cmtnames
	names of model compartments More...

bool	any_copy
	are there any parameter columns for copy / update? More...

bool	done_copying
	have we reached the last data record for this ID? More...

int	next_copy_row
	tracking current actual data row More...

int	last_copy_row
	tracking previous actual data row More...

Constructor & Destructor Documentation

◆ dataobject() [1/2]

dataobject::dataobject	(	Rcpp::NumericMatrix	_data,
		Rcpp::CharacterVector	_parnames
	)

constructor

◆ dataobject() [2/2]

dataobject::dataobject	(	Rcpp::NumericMatrix	_data,
		Rcpp::CharacterVector	_parnames,
		Rcpp::CharacterVector	_initnames
	)

constructor

◆ ~dataobject()

dataobject::~dataobject ( )

Member Function Documentation

◆ carry_out()

void dataobject::carry_out	(	const recstack &	a,
		Rcpp::NumericMatrix &	ans,
		dataobject &	idat,
		const Rcpp::IntegerVector &	data_carry,
		const unsigned int	data_carry_start,
		const Rcpp::IntegerVector &	idata_carry,
		const unsigned int	idata_carry_start
	)

◆ check_idcol()

void dataobject::check_idcol ( dataobject & data )

◆ copy_inits()

void dataobject::copy_inits	(	int	this_row,
		odeproblem *	prob
	)

◆ copy_next_parameters()

void dataobject::copy_next_parameters	(	int	id_n,
		bool	from_data,
		int	this_row,
		odeproblem *	prob
	)

◆ copy_parameters()

void dataobject::copy_parameters	(	int	this_row,
		odeproblem *	prob
	)

◆ end()

int dataobject::end ( int i ) const

inline

◆ get_col_n()

Rcpp::IntegerVector dataobject::get_col_n ( const Rcpp::CharacterVector & what )

◆ get_id_value()

double dataobject::get_id_value ( const int row ) const

inline

◆ get_idata_row()

unsigned int dataobject::get_idata_row ( const double ID )

◆ get_records()

void dataobject::get_records	(	recstack &	a,
		int	NID,
		int	neq,
		unsigned int &	obscount,
		unsigned int &	evcount,
		bool	obsonly,
		bool	debug
	)

◆ get_records_pred()

void dataobject::get_records_pred	(	recstack &	a,
		int	NID,
		int	neq,
		unsigned int &	obscount,
		unsigned int &	evcount,
		bool	obsonly,
		bool	debug
	)

◆ get_uid()

double dataobject::get_uid ( int i ) const

inline

◆ get_value()

double dataobject::get_value	(	const int	row,
		const int	col
	)		const

inline

◆ idata_row()

void dataobject::idata_row ( )

◆ idcol()

unsigned int dataobject::idcol ( ) const

inline

◆ locate_tran()

void dataobject::locate_tran ( )

◆ map_uid()

void dataobject::map_uid ( )

◆ ncol()

unsigned int dataobject::ncol ( ) const

inline

◆ next_id()

void dataobject::next_id ( int id_n )

◆ nid()

unsigned int dataobject::nid ( ) const

inline

◆ nrow()

unsigned int dataobject::nrow ( ) const

inline

◆ reload_parameters()

void dataobject::reload_parameters	(	const Rcpp::NumericVector &	param,
		odeproblem *	prob
	)

◆ return_uid()

uidtype dataobject::return_uid ( )

inline

◆ start()

int dataobject::start ( int i ) const

inline

Member Data Documentation

◆ any_copy

bool dataobject::any_copy

are there any parameter columns for copy / update?

◆ cmt_from

std::vector<int> dataobject::cmt_from

index for compartments in data set

◆ cmt_to

std::vector<int> dataobject::cmt_to

index for compartments in init list

◆ cmtnames

Rcpp::CharacterVector dataobject::cmtnames

names of model compartments

◆ col

std::vector<unsigned int> dataobject::col

◆ Data

Rcpp::NumericMatrix dataobject::Data

◆ Data_names

Rcpp::CharacterVector dataobject::Data_names

◆ done_copying

bool dataobject::done_copying

have we reached the last data record for this ID?

◆ Endrow

std::deque<int> dataobject::Endrow

data set end row for each ID

◆ Idcol

int dataobject::Idcol

which column holds ID

◆ idmap

std::map<double,int> dataobject::idmap

map to get

◆ last_copy_row

int dataobject::last_copy_row

tracking previous actual data row

◆ next_copy_row

int dataobject::next_copy_row

tracking current actual data row

◆ par_from

std::vector<int> dataobject::par_from

index for parameters in data set

◆ par_to

std::vector<int> dataobject::par_to

index for parameters in param list

◆ parnames

Rcpp::CharacterVector dataobject::parnames

names of model parameters

◆ Startrow

std::deque<int> dataobject::Startrow

start row for each ID

◆ Uid

std::deque<double> dataobject::Uid

unique IDs in the data set

The documentation for this class was generated from the following files:

inst/include/dataobject.h
src/dataobject.cpp

Public Member Functions

Public Attributes

Constructor & Destructor Documentation

◆ dataobject() [1/2]

◆ dataobject() [2/2]

◆ ~dataobject()

Member Function Documentation

◆ carry_out()

◆ check_idcol()

◆ copy_inits()

◆ copy_next_parameters()

◆ copy_parameters()

◆ end()

◆ get_col_n()

◆ get_id_value()

◆ get_idata_row()

◆ get_records()

◆ get_records_pred()

◆ get_uid()

◆ get_value()

◆ idata_row()

◆ idcol()

◆ locate_tran()

◆ map_uid()

◆ ncol()

◆ next_id()

◆ nid()

◆ nrow()

◆ reload_parameters()

◆ return_uid()

◆ start()

Member Data Documentation

◆ any_copy

◆ cmt_from

◆ cmt_to

◆ cmtnames

◆ col

◆ Data

◆ Data_names

◆ done_copying

◆ Endrow

◆ Idcol

◆ idmap

◆ last_copy_row

◆ next_copy_row

◆ par_from

◆ par_to

◆ parnames

◆ Startrow

◆ Uid